PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230307.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 324aa    MW: 35727.2 Da    PI: 5.2298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230307.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.88.3e-183786255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR++iN++f+ Lr+l+Pk+    ++K +Ka+ L +++eYI+ Lq
  XP_008230307.1 37 RSKHSETEQRRRSKINERFQMLRDLIPKN----DQKRDKASFLLEVIEYIQFLQ 86
                    899*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.3E-233294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-193295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.52E-173389No hitNo description
PROSITE profilePS5088817.2183585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-153786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-124191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAKASKGHHD EFEDDDEESH GGNLAVKVEG QGREKNRSKH SETEQRRRSK INERFQMLRD  60
LIPKNDQKRD KASFLLEVIE YIQFLQEKVN LYEGYQGWSP EPTKLMPWKN HNRPGENFVD  120
QSQVMNNGSG HENNAVVSPA MLPNTHNSVE SDLGSGVVYK ALDHIPGLAT RSVPNVQQQN  180
IFDPIGSVGL PTQPLQESIS DAENMTSNPP YQLWQGITST TASDDKLKKQ DENSGSGSIS  240
SAYSQGVLNN LTQALQSSGV DLSQASISVQ INVGSRVDSG LTSMASSSKA QLNQSLNNQM  300
TQTQVSSCDE DFEPAHKRLR TGES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229DKLKKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894140.0KP689414.1 Prunus pseudocerasus isolate CL6922.1 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230307.10.0PREDICTED: transcription factor BIM2 isoform X1
TrEMBLA0A0U2JQY40.0A0A0U2JQY4_9R
STRINGVIT_14s0083g00930.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.19e-52BES1-interacting Myc-like protein 2